Publications

Cherkkil, A., J. Hu, I. Oladepo, S. Fausner, D. Surinach, R. Peters, K. Saxena, R. Horstmeyer, and S. B. Kodandaramaiah. “Micro-camera Arrays for Ultra-widefield, Multi-site Cellular Resolution Calcium Imaging Across the Dorsal Cortex of Behaving Mice.” In Optics and the Brain Brain 2024 in Proceedings Optica Biophotonics Congress Biomedical Optics 2024 Translational Microscopy Oct Ots Brain Part of Optica Biophotonics Congress Biomedical Optics, 2024. https://doi.org/10.1364/brain.2024.bm3c.6.

Susstrunk, S., A. Veeraraghavan, R. Horstmeyer, and W. Heidrich. “Message from the Chairs.” 2024 IEEE International Conference on Computational Photography Iccp 2024 Proceedings, January 1, 2024, X–XI. https://doi.org/10.1109/ICCP61108.2024.10644362.

Wu, M. M., L. Kreiss, M. A. Wayne, M. B. Robinson, C. Bruschini, E. Charbon, and R. Horstmeyer. “Efficient signal extraction for diffuse correlation spectroscopy with SPAD arrays at low photon regimes.” In Microscopy Histopathology and Analytics Microscopy 2024 in Proceedings Optica Biophotonics Congress Biomedical Optics 2024 Translational Microscopy Oct Ots Brain Part of Optica Biophotonics Congress Biomedical Optics, 2024.

Chaware, Amey, Kanghyun Kim, Monica Abdelmalak, Wen-Chi Foo, Xiaoyin Sara Jiang, and Roarke Horstmeyer. “Rapid Automated Adenocarcinoma Detection Using a 16-Gigapixel Parallelized Camera Array Microscope.” In LABORATORY INVESTIGATION, 104:S394–95, 2024.

Lee, K. C., H. Che, J. Kim, D. Bae, R. Horstmeyer, and S. A. Lee. “Semi-Supervised Virtual Staining for High-Throughput and Label-Free Histopathology.” In Conference on Lasers and Electro Optics Pacific Rim CLEO PR 2024 in Proceedings 2024 Conference on Lasers and Electro Optics Pacific Rim CLEO PR, 2024.

Wu, M. M., L. Kreiss, M. A. Wayne, M. B. Robinson, C. Bruschini, E. Charbon, and R. Horstmeyer. “Efficient signal extraction for diffuse correlation spectroscopy with SPAD arrays at low photon regimes.” In Optics and the Brain, BRAIN 2024 in Proceedings Optica Biophotonics Congress: Biomedical Optics 2024, Translational, Microscopy, OCT, OTS, BRAIN - Part of Optica Biophotonics Congress: Biomedical Optics, 2024.

Wu, M. M., L. Kreiss, M. A. Wayne, M. B. Robinson, C. Bruschini, E. Charbon, and R. Horstmeyer. “Efficient signal extraction for diffuse correlation spectroscopy with SPAD arrays at low photon regimes.” In Optical Tomography and Spectroscopy, OT and S 2024 in Proceedings Optica Biophotonics Congress: Biomedical Optics 2024, Translational, Microscopy, OCT, OTS, BRAIN - Part of Optica Biophotonics Congress: Biomedical Optics, 2024.

Zhou, Kevin, Clare Cook, Archan Chakraborty, Jennifer Bagwell, Joakim Jönsson, Kyung Chul Lee, Xi Yang, et al. “High-speed 4D fluorescence light field tomography of whole freely moving organisms.” BioRxiv, 2024. https://doi.org/10.1101/2024.09.16.609432.

Kreiss, L., S. Jiang, X. Li, S. Xu, K. C. Zhou, K. C. Lee, A. Mühlberg, et al. “Digital staining in optical microscopy using deep learning - a review.” Photonix 4, no. 1 (December 1, 2023). https://doi.org/10.1186/s43074-023-00113-4.

Wu, Melissa M., Roarke Horstmeyer, and Stefan A. Carp. “scatterBrains: an open database of human head models and companion optode locations for realistic Monte Carlo photon simulations.” Journal of Biomedical Optics 28, no. 10 (October 2023): 100501. https://doi.org/10.1117/1.jbo.28.10.100501.

Mühlberg, Alexander, Paul Ritter, Simon Langer, Chloë Goossens, Stefanie Nübler, Dominik Schneidereit, Oliver Taubmann, et al. “SEMPAI: a Self-Enhancing Multi-Photon Artificial Intelligence for Prior-Informed Assessment of Muscle Function and Pathology.” Advanced Science (Weinheim, Baden-Wurttemberg, Germany) 10, no. 28 (October 2023): e2206319. https://doi.org/10.1002/advs.202206319.

Bian, Liheng, Haoze Song, Lintao Peng, Xuyang Chang, Xi Yang, Roarke Horstmeyer, Lin Ye, et al. “High-resolution single-photon imaging with physics-informed deep learning.” Nature Communications 14, no. 1 (September 2023): 5902. https://doi.org/10.1038/s41467-023-41597-9.

Zhou, Kevin C., Mark Harfouche, Maxwell Zheng, Joakim Jönsson, Kyung Chul Lee, Ron Appel, Paul Reamey, et al. “Computational 3D topographic microscopy from terabytes of data per sample,” June 5, 2023.

Xu, Shiqi, Xiang Dai, Paul Ritter, Kyung Chul Lee, Xi Yang, Lucas Kreiss, Kevin C. Zhou, et al. “Tensorial tomographic Fourier Ptychography with applications to muscle tissue imaging,” May 8, 2023.

Zhou, Kevin C., Mark Harfouche, Colin L. Cooke, Jaehee Park, Pavan C. Konda, Lucas Kreiss, Kanghyun Kim, et al. “Parallelized computational 3D video microscopy of freely moving organisms at multiple gigapixels per second.” Nat Photonics 17, no. 5 (May 2023): 442–50. https://doi.org/10.1038/s41566-023-01171-7.

Yang, Xi, Mark Harfouche, Kevin C. Zhou, Lucas Kreiss, Shiqi Xu, Pavan Chandra Konda, Kanghyun Kim, and Roarke Horstmeyer. “Multi-modal imaging using a cascaded microscope design.” Optics Letters 48, no. 7 (April 2023): 1658–61. https://doi.org/10.1364/ol.471380.

Harfouche, M., K. Kim, K. C. Zhou, P. C. Konda, S. Sharma, E. E. Thomson, C. Cooke, et al. “Imaging across multiple spatial scales with the multi-camera array microscope.” Optica 10, no. 4 (April 1, 2023): 471–80. https://doi.org/10.1364/OPTICA.478010.

Kreiss, Lucas, Shaowei Jiang, Xiang Li, Shiqi Xu, Kevin C. Zhou, Alexander Mühlberg, Kyung Chul Lee, et al. “Digital staining in optical microscopy using deep learning -- a review,” March 14, 2023.

Zhou, Kevin C., Mark Harfouche, Colin L. Cooke, Jaehee Park, Pavan C. Konda, Lucas Kreiss, Kanghyun Kim, et al. “Parallelized computational 3D video microscopy of freely moving organisms at multiple gigapixels per second,” January 19, 2023.

Zhou, Kevin C., Mark Harfouche, Colin L. Cooke, Jaehee Park, Pavan C. Konda, Lucas Kreiss, Kanghyun Kim, et al. “Parallelized computational 3D video microscopy of freely moving organisms at multiple gigapixels per second.” ArXiv, January 19, 2023.

Zhou, K. C., M. Harfouche, M. Zheng, J. Jönsson, K. C. Lee, R. Appel, P. Reamey, et al. “Computational 3D surface microscopy from terabytes of data with a self-supervised reconstruction algorithm.” In Computational Optical Sensing and Imaging in Proceedings Optica Imaging Congress 3D Cosi Dh Flatoptics Is Pcaop Part of Imaging and Applied Optics Congress 2023, 2023. https://doi.org/10.1364/COSI.2023.JM1B.2.

Xu, S., X. Yang, K. Kim, P. Reamey, C. Cook, K. C. Lee, V. Saliu, M. Harfouche, A. Bègue, and R. Horstmeyer. “Multi-scale speckle-plethysmography with a multi-camera array microscope.” In Computational Optical Sensing and Imaging in Proceedings Optica Imaging Congress 3D Cosi Dh Flatoptics Is Pcaop Part of Imaging and Applied Optics Congress 2023, 2023. https://doi.org/10.1364/COSI.2023.CW5B.5.

Kim, Kanghyun, Amey Chaware, Lucas Kreiss, Mark Harfouche, Wen-Chi Foo, Ian Taylor-Cho, Xiaoyin Sara Jiang, and Roarke Horstmeyer. “Rapid On-site Evaluation of Thyroid Fine Needle Aspiration Using a Parallelized 16-Gigapixel Microscope.” In LABORATORY INVESTIGATION, 103:S1548–49, 2023.

Kreiss, L., K. Zhou, K. Kim, M. Harfouche, S. Xu, J. Jönsson, K. C. Lee, et al. “High-throughput imaging across multiple spatial scales with the multi-camera array microscope (MCAM).” In Proceedings of SPIE the International Society for Optical Engineering, Vol. 12622, 2023. https://doi.org/10.1117/12.2675451.

Zhou, K. C., M. Harfouche, M. Zheng, J. Jönsson, K. C. Lee, R. Appel, P. Reamey, et al. “Computational 3D surface microscopy from terabytes of data with a self-supervised reconstruction algorithm.” In Imaging Systems and Applications in Proceedings Optica Imaging Congress 3D Cosi Dh Flatoptics Is Pcaop Part of Imaging and Applied Optics Congress 2023, 2023. https://doi.org/10.1364/ISA.2023.JM1B.2.