Publications

2024

Zhou, K. C., M. Harfouche, M. Zheng, J. Jönsson, K. C. Lee, K. Kim, R. Appel, et al. “Computational 3D topographic microscopy from terabytes of data per sample (Accepted).” Journal of Big Data 11, no. 1 (December 1, 2024). https://doi.org/10.1186/s40537-024-00901-0.

Horstmeyer, Roarke, and Lucas Kreiss. “Deep focusing with broadband light.” Nature Photonics, July 8, 2024. https://doi.org/10.1038/s41566-024-01473-4.

Kreiss, Lucas, Melissa Wu, Michael Wayne, Shiqi Xu, Paul McKee, Derrick Dwamena, Kanghyun Kim, et al. “Beneath the Surface: Revealing Deep-Tissue Blood Flow in Human Subjects with Massively Parallelized Diffuse Correlation Spectroscopy,” March 6, 2024.

Xu, S., X. Yang, P. Ritter, X. Dai, K. C. Lee, L. Kreiss, K. C. Zhou, et al. “Tensorial tomographic Fourier ptychography with applications to muscle tissue imaging.” Advanced Photonics 6, no. 2 (March 1, 2024). https://doi.org/10.1117/1.AP.6.2.026004.

2023

Kreiss, L., S. Jiang, X. Li, S. Xu, K. C. Zhou, K. C. Lee, A. Mühlberg, et al. “Digital staining in optical microscopy using deep learning - a review.” PhotoniX 4, no. 1 (December 1, 2023). https://doi.org/10.1186/s43074-023-00113-4.

Wu, Melissa M., Roarke Horstmeyer, and Stefan A. Carp. “scatterBrains: an open database of human head models and companion optode locations for realistic Monte Carlo photon simulations.” Journal of Biomedical Optics 28, no. 10 (October 2023): 100501. https://doi.org/10.1117/1.jbo.28.10.100501.

Mühlberg, Alexander, Paul Ritter, Simon Langer, Chloë Goossens, Stefanie Nübler, Dominik Schneidereit, Oliver Taubmann, et al. “SEMPAI: a Self-Enhancing Multi-Photon Artificial Intelligence for Prior-Informed Assessment of Muscle Function and Pathology.” Advanced Science (Weinheim, Baden-Wurttemberg, Germany) 10, no. 28 (October 2023): e2206319. https://doi.org/10.1002/advs.202206319.

Bian, Liheng, Haoze Song, Lintao Peng, Xuyang Chang, Xi Yang, Roarke Horstmeyer, Lin Ye, et al. “High-resolution single-photon imaging with physics-informed deep learning.” Nature Communications 14, no. 1 (September 2023): 5902. https://doi.org/10.1038/s41467-023-41597-9.

Zhou, Kevin C., Mark Harfouche, Maxwell Zheng, Joakim Jönsson, Kyung Chul Lee, Ron Appel, Paul Reamey, et al. “Computational 3D topographic microscopy from terabytes of data per sample,” June 5, 2023.

Xu, Shiqi, Xiang Dai, Paul Ritter, Kyung Chul Lee, Xi Yang, Lucas Kreiss, Kevin C. Zhou, et al. “Tensorial tomographic Fourier Ptychography with applications to muscle tissue imaging,” May 8, 2023.

Zhou, Kevin C., Mark Harfouche, Colin L. Cooke, Jaehee Park, Pavan C. Konda, Lucas Kreiss, Kanghyun Kim, et al. “Parallelized computational 3D video microscopy of freely moving organisms at multiple gigapixels per second.” Nat Photonics 17, no. 5 (May 2023): 442–50. https://doi.org/10.1038/s41566-023-01171-7.

Yang, Xi, Mark Harfouche, Kevin C. Zhou, Lucas Kreiss, Shiqi Xu, Pavan Chandra Konda, Kanghyun Kim, and Roarke Horstmeyer. “Multi-modal imaging using a cascaded microscope design.” Optics Letters 48, no. 7 (April 2023): 1658–61. https://doi.org/10.1364/ol.471380.

Harfouche, M., K. Kim, K. C. Zhou, P. C. Konda, S. Sharma, E. E. Thomson, C. Cooke, et al. “Imaging across multiple spatial scales with the multi-camera array microscope.” Optica 10, no. 4 (April 1, 2023): 471–80. https://doi.org/10.1364/OPTICA.478010.

Kreiss, Lucas, Shaowei Jiang, Xiang Li, Shiqi Xu, Kevin C. Zhou, Alexander Mühlberg, Kyung Chul Lee, et al. “Digital staining in optical microscopy using deep learning -- a review,” March 14, 2023.

Zhou, Kevin C., Mark Harfouche, Colin L. Cooke, Jaehee Park, Pavan C. Konda, Lucas Kreiss, Kanghyun Kim, et al. “Parallelized computational 3D video microscopy of freely moving organisms at multiple gigapixels per second,” January 19, 2023.

Zhou, Kevin C., Mark Harfouche, Colin L. Cooke, Jaehee Park, Pavan C. Konda, Lucas Kreiss, Kanghyun Kim, et al. “Parallelized computational 3D video microscopy of freely moving organisms at multiple gigapixels per second.” ArXiv, January 19, 2023.

Zhou, K. C., M. Harfouche, M. Zheng, J. Jönsson, K. C. Lee, R. Appel, P. Reamey, et al. “Computational 3D surface microscopy from terabytes of data with a self-supervised reconstruction algorithm.” In Computational Optical Sensing and Imaging in Proceedings Optica Imaging Congress, 3D, COSI, DH, FLatOptics, IS, PcAOP - Part of Imaging and Applied Optics Congress 2023, 2023. https://doi.org/10.1364/COSI.2023.JM1B.2.

Xu, S., X. Yang, K. Kim, P. Reamey, C. Cook, K. C. Lee, V. Saliu, M. Harfouche, A. Bègue, and R. Horstmeyer. “Multi-scale speckle-plethysmography with a multi-camera array microscope.” In Computational Optical Sensing and Imaging in Proceedings Optica Imaging Congress, 3D, COSI, DH, FLatOptics, IS, PcAOP - Part of Imaging and Applied Optics Congress 2023, 2023. https://doi.org/10.1364/COSI.2023.CW5B.5.

Kim, Kanghyun, Amey Chaware, Lucas Kreiss, Mark Harfouche, Wen-Chi Foo, Ian Taylor-Cho, Xiaoyin Sara Jiang, and Roarke Horstmeyer. “Rapid On-site Evaluation of Thyroid Fine Needle Aspiration Using a Parallelized 16-Gigapixel Microscope.” In LABORATORY INVESTIGATION, 103:S1548–49, 2023.

Kreiss, L., K. Zhou, K. Kim, M. Harfouche, S. Xu, J. Jönsson, K. C. Lee, et al. “High-throughput imaging across multiple spatial scales with the multi-camera array microscope (MCAM).” In Proceedings of SPIE - The International Society for Optical Engineering, Vol. 12622, 2023. https://doi.org/10.1117/12.2675451.

Zhou, K. C., M. Harfouche, M. Zheng, J. Jönsson, K. C. Lee, R. Appel, P. Reamey, et al. “Computational 3D surface microscopy from terabytes of data with a self-supervised reconstruction algorithm.” In Imaging Systems and Applications in Proceedings Optica Imaging Congress, 3D, COSI, DH, FLatOptics, IS, PcAOP - Part of Imaging and Applied Optics Congress 2023, 2023. https://doi.org/10.1364/ISA.2023.JM1B.2.

Lee, K. C., H. Chae, S. Xu, K. Lee, R. Horstmeyer, B. W. Hong, and S. A. Lee. “Fourier Ptychographic Iterative Engine Based on Alternating Direction Method of Multipliers with Anisotropic Total-Variation Regularization.” In Computational Optical Sensing and Imaging in Proceedings Optica Imaging Congress, 3D, COSI, DH, FLatOptics, IS, PcAOP - Part of Imaging and Applied Optics Congress 2023, 2023. https://doi.org/10.1364/COSI.2023.CM4B.4.

Cook, C., K. C. Zhou, and R. Horstmeyer. “Fourier Light Field Camera Array Microscope for Mesoscale 3D Imaging.” In 3D Image Acquisition and Display: Technology, Perception and Applications in Proceedings Optica Imaging Congress, 3D, COSI, DH, FLatOptics, IS, PcAOP 2023, 2023. https://doi.org/10.1364/3D.2023.DTu2A.4.

Xu, S., X. Dai, X. Yang, K. C. Lee, L. Kreiss, K. C. Zhou, K. Kim, A. Chaware, and R. Horstmeyer. “Anisotropic intensity diffraction tomography.” In Computational Optical Sensing and Imaging in Proceedings Optica Imaging Congress, 3D, COSI, DH, FLatOptics, IS, PcAOP - Part of Imaging and Applied Optics Congress 2023, 2023. https://doi.org/10.1364/COSI.2023.CM3B.2.

2022

Bian, Liheng, Haoze Song, Lintao Peng, Xuyang Chang, Xi Yang, Roarke Horstmeyer, Lin Ye, Tong Qin, Dezhi Zheng, and Jun Zhang. “Large-scale single-photon imaging,” December 27, 2022.