Publications

Found 75 results
Type [ Year(Asc)]
2023
Lucas Kreiss, Shaowei Jiang, Xiang Li, Shiqi Xu, Kevin C. Zhou, Kyung Chul Lee, Alexander Mühlberg, Kanghyun Kim, Amey Chaware, Michael Ando et al. "Digital staining in optical microscopy using deep learning - a reviewAbstract." PhotoniX 4, no. 1 (2023).
Liheng Bian, Haoze Song, Lintao Peng, Xuyang Chang, Xi Yang, Roarke Horstmeyer, Lin Ye, Chunli Zhu, Tong Qin, Dezhi Zheng et al. "High-resolution single-photon imaging with physics-informed deep learningAbstract." Nature Communications 14, no. 1 (2023).
Mark Harfouche, Kanghyun Kim, Kevin C. Zhou, Pavan Chandra Konda, Sunanda Sharma, Eric E. Thomson, Colin Cooke, Shiqi Xu, Lucas Kreiss, Amey Chaware et al. "Imaging across multiple spatial scales with the multi-camera array microscope." Optica 10, no. 4 (2023): 471.
Xi Yang, Mark Harfouche, Kevin C. Zhou, Lucas Kreiss, Shiqi Xu, Pavan Chandra Konda, Kanghyun Kim, and Roarke Horstmeyer. "Multi-modal imaging using a cascaded microscope design." Optics Letters 48, no. 7 (2023): 1658.
Kevin C. Zhou, Mark Harfouche, Colin L. Cooke, Jaehee Park, Pavan C. Konda, Lucas Kreiss, Kanghyun Kim, Joakim Jönsson, Thomas Doman, Paul Reamey et al. "Parallelized computational 3D video microscopy of freely moving organisms at multiple gigapixels per second." Nature Photonics (2023).
Melissa M. Wu, Roarke Horstmeyer, and Stefan A. Carp. "scatterBrains: an open database of human head models and companion optode locations for realistic Monte Carlo photon simulations." Journal of Biomedical Optics 28, no. 10 (2023).
Alexander Mühlberg, Paul Ritter, Simon Langer, Chloë Goossens, Stefanie Nübler, Dominik Schneidereit, Oliver Taubmann, Felix Denzinger, Dominik Nörenberg, Michael Haug et al. "SEMPAI: a Self‐Enhancing Multi‐Photon Artificial Intelligence for Prior‐Informed Assessment of Muscle Function and PathologyAbstract." Advanced Science 10, no. 28 (2023).
2022
T. Aidukas, F. Wechsler, L. Loetgering, K. C. Zhou, and R. Horstmeyer. "Applications and Extensions of Fourier Ptychography." Microscopy Today 30, no. 6 (2022).
Bradley Feiger, Erick Lorenzana-Saldivar, Colin Cooke, Roarke Horstmeyer, Muath Bishawi, Julie Doberne, Chad G. Hughes, David Ranney, Soraya Voigt, and Amanda Randles. "Evaluation of U-Net Based Architectures for Automatic Aortic Dissection Segmentation." ACM Transactions on Computing for Healthcare 3, no. 1 (2022): 1-16.
L. Loetgering, T. Aidukas, K. C. Zhou, F. Wechsler, and R. Horstmeyer. "Fourier Ptychography Part II: Phase Retrieval and High-Resolution Image Formation." Microscopy Today 30, no. 5 (2022).
Eric E. Thomson, Mark Harfouche, Kanghyun Kim, Pavan C. Konda, Catherine W. Seitz, Colin Cooke, Shiqi Xu, Whitney S. Jacobs, Robin Blazing, Yang Chen et al. "Gigapixel imaging with a novel multi-camera array microscope." eLife 11 (2022).
Shiqi Xu, Xi Yang, Wenhui Liu, Joakim Jönsson, Ruobing Qian, Pavan Chandra Konda, Kevin C. Zhou, Lucas Kreiß, Haoqian Wang, Qionghai Dai et al. "Imaging Dynamics Beneath Turbid Media via Parallelized Single‐Photon Detection." Advanced Science (2022): 2201885.
Xing Yao, Vinayak Pathak, Haoran Xi, Amey Chaware, Colin Cooke, Kanghyun Kim, Shiqi Xu, Yuting Li, Timothy Dunn, Pavan Chandra Konda et al. "Increasing a microscope’s effective field of view via overlapped imaging and machine learning." Optics Express 30, no. 2 (2022): 1745.
Kevin C. Zhou, Tomas Aidukas, Lars Loetgering, Felix Wechsler, and Roarke Horstmeyer. "Introduction to Fourier Ptychography: Part IAbstract:." Microscopy Today 30, no. 3 (2022): 36-41.
C. L. Cooke, K. Kim, S. Xu, A. Chaware, X. Yao, X. Yang, J. Neff, P. Pittman, C. McCall, C. Glass et al. "A multiple instance learning approach for detecting COVID-19 in peripheral blood smears." PLOS Digital Health 1, no. 8 (2022).
Hasan Ayaz, Wesley B. Baker, Giles Blaney, David A. Boas, Heather Bortfeld, Kenneth Brady, Joshua Brake, Sabrina Brigadoi, Erin M. Buckley, Stefan A. Carp et al. "Optical imaging and spectroscopy for the study of the human brain: status report." Neurophotonics 9, no. S2 (2022).
Xiang Dai, Shiqi Xu, Xi Yang, Kevin C. Zhou, Carolyn Glass, Pavan Chandra Konda, and Roarke Horstmeyer. "Quantitative Jones matrix imaging using vectorial Fourier ptychography." Biomedical Optics Express 13, no. 3 (2022): 1457.
Sylvain Gigan, Ori Katz, Hilton B. de Aguiar, Esben Ravn Andresen, Alexandre Aubry, Jacopo Bertolotti, Emmanuel Bossy, Dorian Bouchet, Joshua Brake, Sophie Brasselet et al. "Roadmap on wavefront shaping and deep imaging in complex media." Journal of Physics: Photonics 4, no. 4 (2022): 042501.
Shiqi Xu, Wenhui Liu, Xi Yang, Joakim Jönsson, Ruobing Qian, Paul McKee, Kanghyun Kim, Pavan Chandra Konda, Kevin C. Zhou, Lucas Kreiß et al. "Transient Motion Classification Through Turbid Volumes via Parallelized Single-Photon Detection and Deep Contrastive EmbeddingImage_1.pdf." Frontiers in Neuroscience 16 (2022).
2021
Tri Vu, Anthony DiSpirito, Daiwei Li, Zixuan Wang, Xiaoyi Zhu, Maomao Chen, Laiming Jiang, Dong Zhang, Jianwen Luo, Yu Shrike Zhang et al. "Deep image prior for undersampling high-speed photoacoustic microscopy." Photoacoustics 22 (2021): 100266.
Wenhui Liu, Ruobing Qian, Shiqi Xu, Pavan Chandra Konda, Joakim Jönsson, Mark Harfouche, Dawid Borycki, Colin Cooke, Edouard Berrocal, Qionghai Dai et al. "Fast and sensitive diffuse correlation spectroscopy with highly parallelized single photon detection." APL Photonics 6, no. 2 (2021): 026106.
Colin L. Cooke, Fanjie Kong, Amey Chaware, Kevin C. Zhou, Kanghyun Kim, Rong Xu, Michael D. Ando, Samuel J. Yang, Pavan Chandra Konda, and Roarke Horstmeyer. Physics-Enhanced Machine Learning for Virtual Fluorescence Microscopy In Proceedings of the IEEE/CVF International Conference on Computer Vision (ICCV)., 2021.
Kevin C. Zhou, Colin Cooke, Jaehee Park, Ruobing Qian, Roarke Horstmeyer, Joseph A. Izatt, and Sina Farsiu. Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition (CVPR) In Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition (CVPR)., 2021.
Xi Yang, Pavan Chandra Konda, Shiqi Xu, Liheng Bian, and Roarke Horstmeyer. "Quantized Fourier ptychography with binary images from SPAD cameras." Photonics Research 9, no. 10 (2021): 1958.
Anthony DiSpirito, Daiwei Li, Tri Vu, Maomao Chen, Dong Zhang, Jianwen Luo, Roarke Horstmeyer, and Junjie Yao. "Reconstructing Undersampled Photoacoustic Microscopy Images Using Deep Learning." IEEE Transactions on Medical Imaging 40, no. 2 (2021): 562-570.

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