Publications

Zhou, K. C., M. Harfouche, M. Zheng, J. Jönsson, K. C. Lee, K. Kim, R. Appel, et al. “Computational 3D topographic microscopy from terabytes of data per sample (Accepted).” Journal of Big Data 11, no. 1 (December 1, 2024). https://doi.org/10.1186/s40537-024-00901-0.

Wang, Quan, Mingliang Pan, Lucas Kreiss, Saeed Samaei, Stefan A. Carp, Johannes D. Johansson, Yuanzhe Zhang, et al. “A comprehensive overview of diffuse correlation spectroscopy: Theoretical framework, recent advances in hardware, analysis, and applications.” NeuroImage 298 (September 2024): 120793. https://doi.org/10.1016/j.neuroimage.2024.120793.

Horstmeyer, R., and L. Kreiss. “Deep focusing with broadband light.” Nature Photonics 18, no. 7 (July 1, 2024): 654–55. https://doi.org/10.1038/s41566-024-01473-4.

Lee, K. C., H. Chae, S. Xu, K. Lee, R. Horstmeyer, S. A. Lee, and B. W. Hong. “Anisotropic regularization for sparsely sampled and noise-robust Fourier ptychography.” Optics Express 32, no. 14 (July 1, 2024): 25343–61. https://doi.org/10.1364/OE.529023.

Kreiss, Lucas, Melissa Wu, Michael Wayne, Shiqi Xu, Paul McKee, Derrick Dwamena, Kanghyun Kim, et al. “Beneath the Surface: Revealing Deep-Tissue Blood Flow in Human Subjects with Massively Parallelized Diffuse Correlation Spectroscopy,” March 6, 2024.

Xu, S., X. Yang, P. Ritter, X. Dai, K. C. Lee, L. Kreiss, K. C. Zhou, et al. “Tensorial tomographic Fourier ptychography with applications to muscle tissue imaging.” Advanced Photonics 6, no. 2 (March 1, 2024). https://doi.org/10.1117/1.AP.6.2.026004.

Wu, M. M., L. Kreiss, M. A. Wayne, M. B. Robinson, C. Bruschini, E. Charbon, and R. Horstmeyer. “Efficient signal extraction for diffuse correlation spectroscopy with SPAD arrays at low photon regimes.” In Microscopy Histopathology and Analytics, Microscopy 2024 in Proceedings Optica Biophotonics Congress: Biomedical Optics 2024, Translational, Microscopy, OCT, OTS, BRAIN - Part of Optica Biophotonics Congress: Biomedical Optics, 2024.

Kreiss, L., K. C. Zhou, C. B. Cook, S. Xu, A. Chaware, and R. Horstmeyer. “Innovations in signal/image processing and data analysis in optical microscopy.” In Biophotonics and Biosensing: From Fundamental Research to Clinical Trials through Advances of Signal and Image Processing, 349–89, 2024. https://doi.org/10.1016/B978-0-44-318840-4.00019-X.

Susstrunk, S., A. Veeraraghavan, R. Horstmeyer, and W. Heidrich. “Message from the Chairs.” 2024 IEEE International Conference on Computational Photography, ICCP 2024 - Proceedings, January 1, 2024, X–XI. https://doi.org/10.1109/ICCP61108.2024.10644362.

Kreiss, L., S. Jiang, X. Li, S. Xu, K. C. Zhou, K. C. Lee, A. Mühlberg, et al. “Digital staining in optical microscopy using deep learning - a review.” PhotoniX 4, no. 1 (December 1, 2023). https://doi.org/10.1186/s43074-023-00113-4.

Mühlberg, Alexander, Paul Ritter, Simon Langer, Chloë Goossens, Stefanie Nübler, Dominik Schneidereit, Oliver Taubmann, et al. “SEMPAI: a Self-Enhancing Multi-Photon Artificial Intelligence for Prior-Informed Assessment of Muscle Function and Pathology.” Advanced Science (Weinheim, Baden-Wurttemberg, Germany) 10, no. 28 (October 2023): e2206319. https://doi.org/10.1002/advs.202206319.

Wu, Melissa M., Roarke Horstmeyer, and Stefan A. Carp. “scatterBrains: an open database of human head models and companion optode locations for realistic Monte Carlo photon simulations.” Journal of Biomedical Optics 28, no. 10 (October 2023): 100501. https://doi.org/10.1117/1.jbo.28.10.100501.

Bian, Liheng, Haoze Song, Lintao Peng, Xuyang Chang, Xi Yang, Roarke Horstmeyer, Lin Ye, et al. “High-resolution single-photon imaging with physics-informed deep learning.” Nature Communications 14, no. 1 (September 2023): 5902. https://doi.org/10.1038/s41467-023-41597-9.

Zhou, Kevin C., Mark Harfouche, Maxwell Zheng, Joakim Jönsson, Kyung Chul Lee, Ron Appel, Paul Reamey, et al. “Computational 3D topographic microscopy from terabytes of data per sample,” June 5, 2023.

Xu, Shiqi, Xiang Dai, Paul Ritter, Kyung Chul Lee, Xi Yang, Lucas Kreiss, Kevin C. Zhou, et al. “Tensorial tomographic Fourier Ptychography with applications to muscle tissue imaging,” May 8, 2023.

Zhou, Kevin C., Mark Harfouche, Colin L. Cooke, Jaehee Park, Pavan C. Konda, Lucas Kreiss, Kanghyun Kim, et al. “Parallelized computational 3D video microscopy of freely moving organisms at multiple gigapixels per second.” Nat Photonics 17, no. 5 (May 2023): 442–50. https://doi.org/10.1038/s41566-023-01171-7.

Harfouche, M., K. Kim, K. C. Zhou, P. C. Konda, S. Sharma, E. E. Thomson, C. Cooke, et al. “Imaging across multiple spatial scales with the multi-camera array microscope.” Optica 10, no. 4 (April 1, 2023): 471–80. https://doi.org/10.1364/OPTICA.478010.

Yang, Xi, Mark Harfouche, Kevin C. Zhou, Lucas Kreiss, Shiqi Xu, Pavan Chandra Konda, Kanghyun Kim, and Roarke Horstmeyer. “Multi-modal imaging using a cascaded microscope design.” Optics Letters 48, no. 7 (April 2023): 1658–61. https://doi.org/10.1364/ol.471380.

Kreiss, Lucas, Shaowei Jiang, Xiang Li, Shiqi Xu, Kevin C. Zhou, Alexander Mühlberg, Kyung Chul Lee, et al. “Digital staining in optical microscopy using deep learning -- a review,” March 14, 2023.

Zhou, Kevin C., Mark Harfouche, Colin L. Cooke, Jaehee Park, Pavan C. Konda, Lucas Kreiss, Kanghyun Kim, et al. “Parallelized computational 3D video microscopy of freely moving organisms at multiple gigapixels per second,” January 19, 2023.

Zhou, Kevin C., Mark Harfouche, Colin L. Cooke, Jaehee Park, Pavan C. Konda, Lucas Kreiss, Kanghyun Kim, et al. “Parallelized computational 3D video microscopy of freely moving organisms at multiple gigapixels per second.” ArXiv, January 19, 2023.

Cook, C., K. C. Zhou, and R. Horstmeyer. “Fourier Light Field Camera Array Microscope for Mesoscale 3D Imaging.” In 3D Image Acquisition and Display: Technology, Perception and Applications in Proceedings Optica Imaging Congress, 3D, COSI, DH, FLatOptics, IS, PcAOP 2023, 2023. https://doi.org/10.1364/3D.2023.DTu2A.4.

Xu, S., X. Dai, X. Yang, K. C. Lee, L. Kreiss, K. C. Zhou, K. Kim, A. Chaware, and R. Horstmeyer. “Anisotropic intensity diffraction tomography.” In Computational Optical Sensing and Imaging in Proceedings Optica Imaging Congress, 3D, COSI, DH, FLatOptics, IS, PcAOP - Part of Imaging and Applied Optics Congress 2023, 2023. https://doi.org/10.1364/COSI.2023.CM3B.2.

Zhou, K. C., M. Harfouche, M. Zheng, J. Jönsson, K. C. Lee, R. Appel, P. Reamey, et al. “Computational 3D surface microscopy from terabytes of data with a self-supervised reconstruction algorithm.” In Computational Optical Sensing and Imaging in Proceedings Optica Imaging Congress, 3D, COSI, DH, FLatOptics, IS, PcAOP - Part of Imaging and Applied Optics Congress 2023, 2023. https://doi.org/10.1364/COSI.2023.JM1B.2.

Xu, S., X. Yang, K. Kim, P. Reamey, C. Cook, K. C. Lee, V. Saliu, M. Harfouche, A. Bègue, and R. Horstmeyer. “Multi-scale speckle-plethysmography with a multi-camera array microscope.” In Computational Optical Sensing and Imaging in Proceedings Optica Imaging Congress, 3D, COSI, DH, FLatOptics, IS, PcAOP - Part of Imaging and Applied Optics Congress 2023, 2023. https://doi.org/10.1364/COSI.2023.CW5B.5.