Publications

Wu, M. M., L. Kreiss, M. A. Wayne, M. B. Robinson, C. Bruschini, E. Charbon, and R. Horstmeyer. “Autocorrelation Bias in Diffuse Correlation Spectroscopy Observable via SPAD Arrays (Accepted).” IEEE Journal of Selected Topics in Quantum Electronics 32, no. 4 (July 1, 2026). https://doi.org/10.1109/JSTQE.2025.3637165.

Chul Lee, K., H. Chae, J. Kim, L. Kreiss, H. Kim, Y. Guk Kang, K. C. Zhou, et al. “Semi-supervised virtual staining using learned-illumination Fourier ptychography for high-speed label-free histopathology (Accepted).” Jphys Photonics 8, no. 1 (March 1, 2026). https://doi.org/10.1088/2515-7647/ae270f.

Wang, R., Q. Zhao, L. Loetgering, F. Allars, Z. Hong, T. J. Pennycook, R. Horstmeyer, J. Rodenburg, A. Maiden, and G. Zheng. “Ptychography at all wavelengths.” Nature Reviews Methods Primers 5, no. 1 (December 1, 2025). https://doi.org/10.1038/s43586-025-00438-3.

Bercaw, Jefferson R., Patrick X. Bradley, Christopher C. Otap, Lauren N. Heckelman, Krystal S. Tamayo, Kwadwo A. Owusu-Akyaw, Andrzej S. Kosinski, Roarke W. Horstmeyer, Charles E. Spritzer, and Louis E. DeFrate. “A deep learning-based approach for measuring patellar cartilage deformations from knee MR images.” J Biomech 192 (November 2025): 112930. https://doi.org/10.1016/j.jbiomech.2025.112930.

Hu, Jia, Arun Cherkkil, Daniel A. Surinach, Ibrahim Oladepo, Ridwan Hossain, Skylar Fausner, Kapil Saxena, et al. “Pan-cortical cellular imaging in freely behaving mice using a miniaturized micro-camera array microscope (mini-MCAM).” Science Advances 11, no. 44 (October 2025): eadt3634. https://doi.org/10.1126/sciadv.adt3634.

Yang, Xi, Haitao Chen, Lucas Kreiss, Clare B. Cook, Genevieve Kuczewski, Mark Harfouche, Martin O. Bohlen, and Roarke Horstmeyer. “Curvature-adaptive gigapixel microscopy at submicron resolution and centimeter scale.” Optics Letters 50, no. 19 (October 2025): 5977–80. https://doi.org/10.1364/ol.572466.

Cook, Clare B., Kevin C. Zhou, Martin Bohlen, Mark Harfouche, Kanghyun Kim, Paul Reamey, Julia S. Foust, et al. “Fourier Lightfield Multiview Stereoscope for Large Field-of-View 3D Imaging in Microsurgical Settings.” Advanced Photonics Nexus 4, no. 4 (June 2025): 046008. https://doi.org/10.1117/1.apn.4.4.046008.

Zhou, Kevin C., Clare Cook, Archan Chakraborty, Jennifer Bagwell, Joakim Jönsson, Kyung Chul Lee, Xi Yang, et al. “High-speed 4D fluorescence light field tomography of whole freely moving organisms.” Optica 12, no. 5 (May 20, 2025): 674–84. https://doi.org/10.1364/optica.549707.

Kreiss, Lucas, Melissa Wu, Michael Wayne, Shiqi Xu, Paul McKee, Derrick Dwamena, Kanghyun Kim, et al. “Beneath the surface: revealing deep-tissue blood flow in human subjects with massively parallelized diffuse correlation spectroscopy.” Neurophotonics 12, no. 2 (April 2025): 025007. https://doi.org/10.1117/1.nph.12.2.025007.

Kreiss, Lucas, Weiheng Tang, Ramana Balla, Xi Yang, Amey Chaware, Kanghyun Kim, Clare B. Cook, et al. “Recording dynamic facial micro-expressions with a multi-focus camera array.” Biomedical Optics Express 16, no. 2 (February 2025): 617–27. https://doi.org/10.1364/boe.547944.

Shi, B., A. Veeraraghavan, R. Horstmeyer, and W. Heidrich. “Guest Editorial: Introduction to the Special Section on Computational Photography.” IEEE Transactions on Pattern Analysis and Machine Intelligence 47, no. 9 (January 1, 2025): 7179–81. https://doi.org/10.1109/TPAMI.2025.3584422.

Zhou, K. C., M. Harfouche, M. Zheng, J. Jönsson, K. C. Lee, K. Kim, R. Appel, et al. “Computational 3D topographic microscopy from terabytes of data per sample.” Journal of Big Data 11, no. 1 (December 1, 2024). https://doi.org/10.1186/s40537-024-00901-0.

Kreiss, Lucas, Weiheng Tang, Ramana Balla, Xi Yang, Amey Chaware, Kanghyun Kim, Clare B. Cook, et al. “Recording dynamic facial micro-expressions with a multi-focus camera array,” October 2, 2024.

Kim, Kanghyun, Amey Chaware, Clare B. Cook, Shiqi Xu, Monica Abdelmalak, Colin Cooke, Kevin C. Zhou, et al. “Rapid 3D imaging at cellular resolution for digital cytopathology with a multi-camera array scanner (MCAS).” Npj Imaging 2, no. 1 (October 1, 2024): 39. https://doi.org/10.1038/s44303-024-00042-2.

Kim, Kanghyun, Amey Chaware, Clare B. Cook, Shiqi Xu, Monica Abdelmalak, Colin Cooke, Kevin C. Zhou, et al. “Rapid 3D imaging at cellular resolution for digital cytopathology with a multi-camera array scanner (MCAS),” September 24, 2024.

Wang, Quan, Mingliang Pan, Lucas Kreiss, Saeed Samaei, Stefan A. Carp, Johannes D. Johansson, Yuanzhe Zhang, et al. “A comprehensive overview of diffuse correlation spectroscopy: Theoretical framework, recent advances in hardware, analysis, and applications.” NeuroImage 298 (September 2024): 120793. https://doi.org/10.1016/j.neuroimage.2024.120793.

Hu, Jia, Arun Cherkkil, Daniel A. Surinach, Ibrahim Oladepo, Ridwan F. Hossain, Skylar Fausner, Kapil Saxena, et al. “Pan-cortical cellular imaging in freely behaving mice using a miniaturized micro-camera array microscope (mini-MCAM).” BioRxiv, July 29, 2024. https://doi.org/10.1101/2024.07.04.601964.

Horstmeyer, R., and L. Kreiss. “Deep focusing with broadband light.” Nature Photonics 18, no. 7 (July 1, 2024): 654–55. https://doi.org/10.1038/s41566-024-01473-4.

Lee, Kyung Chul, Hyesuk Chae, Shiqi Xu, Kyungwon Lee, Roarke Horstmeyer, Seung Ah Lee, and Byung-Woo Hong. “Anisotropic regularization for sparsely sampled and noise-robust Fourier ptychography.” Optics Express 32, no. 14 (July 2024): 25343–61. https://doi.org/10.1364/oe.529023.

Wang, Quan, Mingliang Pan, Lucas Kreiss, Saeed Samaei, Stefan A. Carp, Johannes D. Johansson, Yuanzhe Zhang, et al. “A comprehensive overview of diffuse correlation spectroscopy: theoretical framework, recent advances in hardware, analysis, and applications,” May 18, 2024.

Kreiss, Lucas, Melissa Wu, Michael Wayne, Shiqi Xu, Paul McKee, Derrick Dwamena, Kanghyun Kim, et al. “Beneath the Surface: Revealing Deep-Tissue Blood Flow in Human Subjects with Massively Parallelized Diffuse Correlation Spectroscopy,” March 6, 2024.

Xu, S., X. Yang, P. Ritter, X. Dai, K. C. Lee, L. Kreiss, K. C. Zhou, et al. “Tensorial tomographic Fourier ptychography with applications to muscle tissue imaging.” Advanced Photonics 6, no. 2 (March 1, 2024). https://doi.org/10.1117/1.AP.6.2.026004.

Wu, M. M., L. Kreiss, M. A. Wayne, M. B. Robinson, C. Bruschini, E. Charbon, and R. Horstmeyer. “Efficient signal extraction for diffuse correlation spectroscopy with SPAD arrays at low photon regimes.” In Optical Tomography and Spectroscopy, OT and S 2024 in Proceedings Optica Biophotonics Congress: Biomedical Optics 2024, Translational, Microscopy, OCT, OTS, BRAIN - Part of Optica Biophotonics Congress: Biomedical Optics, 2024.

Zhou, Kevin, Clare Cook, Archan Chakraborty, Jennifer Bagwell, Joakim Jönsson, Kyung Chul Lee, Xi Yang, et al. “High-speed 4D fluorescence light field tomography of whole freely moving organisms.” BioRxiv, 2024. https://doi.org/10.1101/2024.09.16.609432.

Cherkkil, A., J. Hu, I. Oladepo, S. Fausner, D. Surinach, R. Peters, K. Saxena, R. Horstmeyer, and S. B. Kodandaramaiah. “Micro-camera Arrays for Ultra-widefield, Multi-site Cellular Resolution Calcium Imaging Across the Dorsal Cortex of Behaving Mice.” In Optics and the Brain, BRAIN 2024 in Proceedings Optica Biophotonics Congress: Biomedical Optics 2024, Translational, Microscopy, OCT, OTS, BRAIN - Part of Optica Biophotonics Congress: Biomedical Optics, 2024.