Publications

Zhou, K. C., C. Cook, A. Chakraborty, J. Bagwell, J. Jönsson, K. C. Lee, X. Yang, et al. “High-speed 4D fluorescence light field tomography of whole freely moving organisms.” Optica 12, no. 5 (May 20, 2025): 674–84. https://doi.org/10.1364/OPTICA.549707.

Kreiss, Lucas, Melissa Wu, Michael Wayne, Shiqi Xu, Paul McKee, Derrick Dwamena, Kanghyun Kim, et al. “Beneath the surface: revealing deep-tissue blood flow in human subjects with massively parallelized diffuse correlation spectroscopy.” Neurophotonics 12, no. 2 (April 2025): 025007. https://doi.org/10.1117/1.nph.12.2.025007.

Kreiss, Lucas, Weiheng Tang, Ramana Balla, Xi Yang, Amey Chaware, Kanghyun Kim, Clare B. Cook, et al. “Recording dynamic facial micro-expressions with a multi-focus camera array.” Biomedical Optics Express 16, no. 2 (February 2025): 617–27. https://doi.org/10.1364/boe.547944.

Zhou, K. C., M. Harfouche, M. Zheng, J. Jönsson, K. C. Lee, K. Kim, R. Appel, et al. “Computational 3D topographic microscopy from terabytes of data per sample.” Journal of Big Data 11, no. 1 (December 1, 2024). https://doi.org/10.1186/s40537-024-00901-0.

Kreiss, Lucas, Weiheng Tang, Ramana Balla, Xi Yang, Amey Chaware, Kanghyun Kim, Clare B. Cook, et al. “Recording dynamic facial micro-expressions with a multi-focus camera array,” October 2, 2024.

Kim, Kanghyun, Amey Chaware, Clare B. Cook, Shiqi Xu, Monica Abdelmalak, Colin Cooke, Kevin C. Zhou, et al. “Rapid 3D imaging at cellular resolution for digital cytopathology with a multi-camera array scanner (MCAS),” September 24, 2024.

Zhou, Kevin C., Clare Cook, Archan Chakraborty, Jennifer Bagwell, Joakim Jönsson, Kyung Chul Lee, Xi Yang, et al. “High-speed 4D fluorescence light field tomography of whole freely moving organisms.” Cold Spring Harbor Laboratory, September 16, 2024. https://doi.org/10.1101/2024.09.16.609432.

Wang, Quan, Mingliang Pan, Lucas Kreiss, Saeed Samaei, Stefan A. Carp, Johannes D. Johansson, Yuanzhe Zhang, et al. “A comprehensive overview of diffuse correlation spectroscopy: Theoretical framework, recent advances in hardware, analysis, and applications.” NeuroImage 298 (September 2024): 120793. https://doi.org/10.1016/j.neuroimage.2024.120793.

Hu, Jia, Arun Cherkkil, Daniel A. Surinach, Ibrahim Oladepo, Ridwan F. Hossain, Skylar Fausner, Kapil Saxena, et al. “Pan-cortical cellular imaging in freely behaving mice using a miniaturized micro-camera array microscope (mini-MCAM).” BioRxiv, July 29, 2024. https://doi.org/10.1101/2024.07.04.601964.

Horstmeyer, R., and L. Kreiss. “Deep focusing with broadband light.” Nature Photonics 18, no. 7 (July 1, 2024): 654–55. https://doi.org/10.1038/s41566-024-01473-4.

Lee, Kyung Chul, Hyesuk Chae, Shiqi Xu, Kyungwon Lee, Roarke Horstmeyer, Seung Ah Lee, and Byung-Woo Hong. “Anisotropic regularization for sparsely sampled and noise-robust Fourier ptychography.” Optics Express 32, no. 14 (July 2024): 25343–61. https://doi.org/10.1364/oe.529023.

Wang, Quan, Mingliang Pan, Lucas Kreiss, Saeed Samaei, Stefan A. Carp, Johannes D. Johansson, Yuanzhe Zhang, et al. “A comprehensive overview of diffuse correlation spectroscopy: theoretical framework, recent advances in hardware, analysis, and applications,” May 18, 2024.

Kreiss, Lucas, Melissa Wu, Michael Wayne, Shiqi Xu, Paul McKee, Derrick Dwamena, Kanghyun Kim, et al. “Beneath the Surface: Revealing Deep-Tissue Blood Flow in Human Subjects with Massively Parallelized Diffuse Correlation Spectroscopy,” March 6, 2024.

Xu, S., X. Yang, P. Ritter, X. Dai, K. C. Lee, L. Kreiss, K. C. Zhou, et al. “Tensorial tomographic Fourier ptychography with applications to muscle tissue imaging.” Advanced Photonics 6, no. 2 (March 1, 2024). https://doi.org/10.1117/1.AP.6.2.026004.

Wu, M. M., L. Kreiss, M. A. Wayne, M. B. Robinson, C. Bruschini, E. Charbon, and R. Horstmeyer. “Efficient signal extraction for diffuse correlation spectroscopy with SPAD arrays at low photon regimes.” In Microscopy Histopathology and Analytics Microscopy 2024 in Proceedings Optica Biophotonics Congress Biomedical Optics 2024 Translational Microscopy Oct Ots Brain Part of Optica Biophotonics Congress Biomedical Optics, 2024.

Chaware, Amey, Kanghyun Kim, Monica Abdelmalak, Wen-Chi Foo, Xiaoyin Sara Jiang, and Roarke Horstmeyer. “Rapid Automated Adenocarcinoma Detection Using a 16-Gigapixel Parallelized Camera Array Microscope.” In LABORATORY INVESTIGATION, 104:S394–95, 2024.

Lee, K. C., H. Che, J. Kim, D. Bae, R. Horstmeyer, and S. A. Lee. “Semi-Supervised Virtual Staining for High-Throughput and Label-Free Histopathology.” In Conference on Lasers and Electro Optics Pacific Rim CLEO PR 2024 in Proceedings 2024 Conference on Lasers and Electro Optics Pacific Rim CLEO PR, 2024.

Wu, M. M., L. Kreiss, M. A. Wayne, M. B. Robinson, C. Bruschini, E. Charbon, and R. Horstmeyer. “Efficient signal extraction for diffuse correlation spectroscopy with SPAD arrays at low photon regimes.” In Optics and the Brain, BRAIN 2024 in Proceedings Optica Biophotonics Congress: Biomedical Optics 2024, Translational, Microscopy, OCT, OTS, BRAIN - Part of Optica Biophotonics Congress: Biomedical Optics, 2024.

Wu, M. M., L. Kreiss, M. A. Wayne, M. B. Robinson, C. Bruschini, E. Charbon, and R. Horstmeyer. “Efficient signal extraction for diffuse correlation spectroscopy with SPAD arrays at low photon regimes.” In Optical Tomography and Spectroscopy, OT and S 2024 in Proceedings Optica Biophotonics Congress: Biomedical Optics 2024, Translational, Microscopy, OCT, OTS, BRAIN - Part of Optica Biophotonics Congress: Biomedical Optics, 2024.

Cherkkil, A., J. Hu, I. Oladepo, S. Fausner, D. Surinach, R. Peters, K. Saxena, R. Horstmeyer, and S. B. Kodandaramaiah. “Micro-camera Arrays for Ultra-widefield, Multi-site Cellular Resolution Calcium Imaging Across the Dorsal Cortex of Behaving Mice.” In Optics and the Brain, BRAIN 2024 in Proceedings Optica Biophotonics Congress: Biomedical Optics 2024, Translational, Microscopy, OCT, OTS, BRAIN - Part of Optica Biophotonics Congress: Biomedical Optics, 2024.

Kreiss, L., K. C. Zhou, C. B. Cook, S. Xu, A. Chaware, and R. Horstmeyer. “Innovations in signal/image processing and data analysis in optical microscopy.” In Biophotonics and Biosensing from Fundamental Research to Clinical Trials Through Advances of Signal and Image Processing, 349–89, 2024. https://doi.org/10.1016/B978-0-44-318840-4.00019-X.

Wu, M. M., L. Kreiss, M. A. Wayne, M. B. Robinson, C. Bruschini, E. Charbon, and R. Horstmeyer. “Efficient signal extraction for diffuse correlation spectroscopy with SPAD arrays at low photon regimes.” In Optical Tomography and Spectroscopy Ot and S 2024 in Proceedings Optica Biophotonics Congress Biomedical Optics 2024 Translational Microscopy Oct Ots Brain Part of Optica Biophotonics Congress Biomedical Optics, 2024. https://doi.org/10.1364/translational.2024.js4a.40.

Cherkkil, A., J. Hu, I. Oladepo, S. Fausner, D. Surinach, R. Peters, K. Saxena, R. Horstmeyer, and S. B. Kodandaramaiah. “Micro-camera Arrays for Ultra-widefield, Multi-site Cellular Resolution Calcium Imaging Across the Dorsal Cortex of Behaving Mice.” In Optics and the Brain Brain 2024 in Proceedings Optica Biophotonics Congress Biomedical Optics 2024 Translational Microscopy Oct Ots Brain Part of Optica Biophotonics Congress Biomedical Optics, 2024. https://doi.org/10.1364/brain.2024.bm3c.6.

Susstrunk, S., A. Veeraraghavan, R. Horstmeyer, and W. Heidrich. “Message from the Chairs.” 2024 IEEE International Conference on Computational Photography Iccp 2024 Proceedings, January 1, 2024, X–XI. https://doi.org/10.1109/ICCP61108.2024.10644362.

Kreiss, L., S. Jiang, X. Li, S. Xu, K. C. Zhou, K. C. Lee, A. Mühlberg, et al. “Digital staining in optical microscopy using deep learning - a review.” Photonix 4, no. 1 (December 1, 2023). https://doi.org/10.1186/s43074-023-00113-4.