Publications

Wang, Jiacheng, Kira L. Heikes, Yufei Wu, Anne Belle Briggs, Kevin Li, Nadia Eliora Suriato, Srihas Surapaneni, Roarke Horstmeyer, Michel Bagnat, and Akankshi Munjal. “Hydrostatic pressure shapes and canalizes semicircular canal morphology to ensure vestibular function.,” July 23, 2026. https://doi.org/10.64898/2026.07.22.740136.

Deb, Diptodip, Gert-Jan Both, Eric Bezzam, Amit Kohli, Siqi Yang, Amey Chaware, Cédric Allier, et al. “Chromatix: a differentiable, GPU-accelerated wave-optics library.” Nature Methods 23, no. 7 (July 2026): 1388–98. https://doi.org/10.1038/s41592-026-03121-x.

Gustafson, Kathryn E., Neeru Sarin, Jocelyn He, Gui-Shuang Ying, Vincent Tai, Katrina P. Winter, C Michael Cotten, Cynthia A. Toth, and BabySTEPS Group. “Very Preterm Infant Retinal Microanatomy at 36 Weeks' Postmenstrual Age and 2-Year Neurodevelopment.” JAMA Ophthalmol 144, no. 7 (July 1, 2026): 637–46. https://doi.org/10.1001/jamaophthalmol.2026.1782.

Wu, M. M., L. Kreiss, M. A. Wayne, M. B. Robinson, C. Bruschini, E. Charbon, and R. Horstmeyer. “Autocorrelation Bias in Diffuse Correlation Spectroscopy Observable via SPAD Arrays.” IEEE Journal of Selected Topics in Quantum Electronics 32, no. 4 (July 1, 2026). https://doi.org/10.1109/JSTQE.2025.3637165.

Cherkkil, Arun, Zoey Viavattine, Vamsy Kota, Kapil Saxena, Daniel Surinach, Ibrahim Oladepo, Jill Juneau, et al. “CortexCAM: A Camera Array Microscope for Cortex-Wide Cellular Imaging in Freely Locomoting Mice.” Res Sq, June 2, 2026. https://doi.org/10.21203/rs.3.rs-9005693/v1.

Kreiss, Lucas, Amey Chaware, Maryam Roohian, Sarah Lemire, Oana-Maria Thoma, Birgitta Carlé, Maximilian Waldner, Sebastian Schürmann, Oliver Friedrich, and Roarke Horstmeyer. “Cell-MICS: Detecting Immune Cells With Label-Free Two-Photon Autofluorescence and Deep Learning.” Journal of Biophotonics 19, no. 4 (April 2026): e70260. https://doi.org/10.1002/jbio.70260.

Bao, Xiangjiang, Zheng-da Hu, Lucas Kreiss, Josh Lerner, and Roarke Horstmeyer. “Towards a mobile quantitative phase imaging microscope with smartphone phase-detection sensors.” Biomedical Optics Express 17, no. 4 (April 2026): 1611–31. https://doi.org/10.1364/boe.589002.

Deb, Diptodip, Gert-Jan Both, Eric Bezzam, Amit Kohli, Siqi Yang, Arney Chaware, Cédric Allier, et al. “Chromatix: a differentiable, GPU-accelerated wave-optics library.” BioRxiv, March 25, 2026. https://doi.org/10.1101/2025.04.29.651152.

Tang, S. J., C. B. Cook, J. Foust, H. Chen, H. Shi, M. Harfouche, C. Toth, A. Kuo, and R. W. Horstmeyer. “Real-time 3D reconstruction and display of synchronized Fourier lightfield video for novel microsurgical applications.” In Progress in Biomedical Optics and Imaging Proceedings of SPIE, Vol. 13838, 2026. https://doi.org/10.1117/12.3097764.

Lerner, J. F., Y. Miao, K. Kim, L. A. Kreiß, M. Harfouche, J. W. Hickey, and R. W. Horstmeyer. “Extremely high-Throughput quantitative phase imaging of live-cells with a multi-camera array microscope.” In Progress in Biomedical Optics and Imaging Proceedings of SPIE, Vol. 13861, 2026. https://doi.org/10.1117/12.3077986.

Bao, Xiangjiang, Lucas Kreiss, Clare B. Cook, Haoyu Gong, Mark Harfouche, and Roarke Horstmeyer. “Wide-field reflective imaging with an epi-illumination multi-camera array microscope.” Optics Express 34, no. 6 (March 2026): 9739–52. https://doi.org/10.1364/oe.582497.

Chul Lee, K., H. Chae, J. Kim, L. Kreiss, H. Kim, Y. Guk Kang, K. C. Zhou, et al. “Semi-supervised virtual staining using learned-illumination Fourier ptychography for high-speed label-free histopathology.” Jphys Photonics 8, no. 1 (March 1, 2026). https://doi.org/10.1088/2515-7647/ae270f.

Chen, Haitao, Kevin Li, Lucas Kreiss, Paul Reamey, Lain X. Pierce, Ralph Zhang, Ricardo Da Luz, et al. “High-throughput multi-camera array microscope platform for automated 3D behavioral analysis of swimming zebrafish larvae.” Communications Biology 9, no. 1 (January 2026): 141. https://doi.org/10.1038/s42003-025-09421-w.

Bercaw, Jefferson R., Patrick X. Bradley, Christopher C. Otap, Lauren N. Heckelman, Krystal S. Tamayo, Kwadwo A. Owusu-Akyaw, Andrzej S. Kosinski, Roarke W. Horstmeyer, Charles E. Spritzer, and Louis E. DeFrate. “A deep learning-based approach for measuring patellar cartilage deformations from knee MR images.” J Biomech 192 (November 2025): 112930. https://doi.org/10.1016/j.jbiomech.2025.112930.

Yang, Xi, Haitao Chen, Lucas Kreiss, Clare B. Cook, Genevieve Kuczewski, Mark Harfouche, Martin O. Bohlen, and Roarke Horstmeyer. “Curvature-adaptive gigapixel microscopy at submicron resolution and centimeter scale.” Optics Letters 50, no. 19 (October 2025): 5977–80. https://doi.org/10.1364/ol.572466.

Hu, Jia, Arun Cherkkil, Daniel A. Surinach, Ibrahim Oladepo, Ridwan Hossain, Skylar Fausner, Kapil Saxena, et al. “Pan-cortical cellular imaging in freely behaving mice using a miniaturized micro-camera array microscope (mini-MCAM).” Science Advances 11, no. 44 (October 2025): eadt3634. https://doi.org/10.1126/sciadv.adt3634.

Nomdedeu-Sancho, G., N. Edenhoffer, A. Gorkun, J. Bechtel, J. Doman, C. Schaaf, N. Alvarez, et al. “Development of skin-integrated melanoma organoids to study the tumor microenvironment-mediated mechanisms of melanoma progression and metastasis in vitro.” In Journal of Clinical Oncology, 43:e21547–e21547, 2025. https://doi.org/10.1200/JCO.2025.43.16_suppl.e21547.

Cook, Clare B., Kevin C. Zhou, Martin Bohlen, Mark Harfouche, Kanghyun Kim, Paul Reamey, Julia S. Foust, et al. “Fourier Lightfield Multiview Stereoscope for Large Field-of-View 3D Imaging in Microsurgical Settings.” Advanced Photonics Nexus 4, no. 4 (June 2025): 046008. https://doi.org/10.1117/1.apn.4.4.046008.

Zhou, Kevin C., Clare Cook, Archan Chakraborty, Jennifer Bagwell, Joakim Jönsson, Kyung Chul Lee, Xi Yang, et al. “High-speed 4D fluorescence light field tomography of whole freely moving organisms.” Optica 12, no. 5 (May 20, 2025): 674–84. https://doi.org/10.1364/optica.549707.

Kreiss, Lucas, Melissa Wu, Michael Wayne, Shiqi Xu, Paul McKee, Derrick Dwamena, Kanghyun Kim, et al. “Beneath the surface: revealing deep-tissue blood flow in human subjects with massively parallelized diffuse correlation spectroscopy.” Neurophotonics 12, no. 2 (April 2025): 025007. https://doi.org/10.1117/1.nph.12.2.025007.

Kreiss, Lucas, Weiheng Tang, Ramana Balla, Xi Yang, Amey Chaware, Kanghyun Kim, Clare B. Cook, et al. “Recording dynamic facial micro-expressions with a multi-focus camera array.” Biomedical Optics Express 16, no. 2 (February 2025): 617–27. https://doi.org/10.1364/boe.547944.

Wang, Ruihai, Qianhao Zhao, Lars Loetgering, Frederick Allars, Zhixuan Hong, Timothy J. Pennycook, Roarke Horstmeyer, John Rodenburg, Andrew Maiden, and Guoan Zheng. “Ptychography at all wavelengths.” Nature Reviews. Methods Primers 5 (January 2025): 68. https://doi.org/10.1038/s43586-025-00438-3.

Shi, B., A. Veeraraghavan, R. Horstmeyer, and W. Heidrich. “Guest Editorial: Introduction to the Special Section on Computational Photography.” IEEE Transactions on Pattern Analysis and Machine Intelligence 47, no. 9 (January 1, 2025): 7179–81. https://doi.org/10.1109/TPAMI.2025.3584422.

Zhou, K. C., M. Harfouche, M. Zheng, J. Jönsson, K. C. Lee, K. Kim, R. Appel, et al. “Computational 3D topographic microscopy from terabytes of data per sample.” Journal of Big Data 11, no. 1 (December 1, 2024). https://doi.org/10.1186/s40537-024-00901-0.

Kreiss, Lucas, Weiheng Tang, Ramana Balla, Xi Yang, Amey Chaware, Kanghyun Kim, Clare B. Cook, et al. “Recording dynamic facial micro-expressions with a multi-focus camera array,” October 2, 2024.