Publications

Yang, Xi, Mark Harfouche, Kevin C. Zhou, Lucas Kreiss, Shiqi Xu, Kanghyun Kim, and Roarke Horstmeyer. “Multi-modal imaging using a cascaded microscope design,” August 18, 2022.

Cooke, Colin L., Kanghyun Kim, Shiqi Xu, Amey Chaware, Xing Yao, Xi Yang, Jadee Neff, et al. “A multiple instance learning approach for detecting COVID-19 in peripheral blood smears.” PLOS Digit Health 1, no. 8 (August 2022): e0000078. https://doi.org/10.1371/journal.pdig.0000078.

Ayaz, Hasan, Wesley B. Baker, Giles Blaney, David A. Boas, Heather Bortfeld, Kenneth Brady, Joshua Brake, et al. “Optical imaging and spectroscopy for the study of the human brain: status report.” Neurophotonics 9, no. Suppl 2 (August 2022): S24001. https://doi.org/10.1117/1.nph.9.s2.s24001.

Xu, Shiqi, Xi Yang, Wenhui Liu, Joakim Jönsson, Ruobing Qian, Pavan Chandra Konda, Kevin C. Zhou, et al. “Imaging Dynamics Beneath Turbid Media via Parallelized Single-Photon Detection.” Advanced Science (Weinheim, Baden-Wurttemberg, Germany) 9, no. 24 (August 2022): e2201885. https://doi.org/10.1002/advs.202201885.

Zhou, Kevin C., Tomas Aidukas, Lars Loetgering, Felix Wechsler, and Roarke Horstmeyer. “Introduction to Fourier Ptychography: Part I.” Microscopy Today 30, no. 3 (May 2022): 36–41. https://doi.org/10.1017/s1551929522000670.

Xu, Shiqi, Xiang Dai, Xi Yang, Kevin C. Zhou, Kanghyun Kim, Vinayak Pathak, Carolyn Glass, and Roarke Horstmeyer. “Tensorial tomographic differential phase-contrast microscopy,” April 24, 2022.

Xu, Shiqi, Wenhui Liu, Xi Yang, Joakim Jönsson, Ruobing Qian, Paul McKee, Kanghyun Kim, et al. “Transient motion classification through turbid volumes via parallelized single-photon detection and deep contrastive embedding,” April 4, 2022.

Dai, Xiang, Shiqi Xu, Xi Yang, Kevin C. Zhou, Carolyn Glass, Pavan Chandra Konda, and Roarke Horstmeyer. “Quantitative Jones matrix imaging using vectorial Fourier ptychography.” Biomed Opt Express 13, no. 3 (March 1, 2022): 1457–70. https://doi.org/10.1364/BOE.448804.

Glass, Carolyn, Kyle J. Lafata, William Jeck, Roarke Horstmeyer, Colin Cooke, Jeffrey Everitt, Matthew Glass, David Dov, and Michael A. Seidman. “The Role of Machine Learning in Cardiovascular Pathology.” Can J Cardiol 38, no. 2 (February 2022): 234–45. https://doi.org/10.1016/j.cjca.2021.11.008.

Kevin C Zhou, Tomas Aidukas, Lars Loetgering, Felix Wechsler, Roarke Horstmeyer, Introduction to Fourier Ptychography: Part I, Microscopy Today, Volume 30, Issue 3, 1 May 2022, Pages 36–41, https://doi.org/10.1017/S1551929522000670

Zhou, K. C., M. Harfouche, C. Cooke, J. Park, P. Konda, J. Doman, P. Reamey, et al. “Gigapixel-per-second, wide-field 3D topographic imaging with physics-supervised learning.” In Optics InfoBase Conference Papers, 2022.

Kim, K., K. C. Zhou, M. Harfouche, and R. Horstmeyer. “Parallelized 16-gigapixel microscopy for rapid imaging of multiple whole slides.” In Optics InfoBase Conference Papers, 2022.

Xu, S., X. Dai, X. Yang, K. C. Zhou, K. Kim, V. Pathak, C. Glass, and R. Horstmeyer. “Tensorial tomographic differential phase-contrast microscopy.” In IEEE International Conference on Computational Photography, ICCP 2022, 2022. https://doi.org/10.1109/ICCP54855.2022.9887674.

Xu, Shiqi, Wenhui Liu, Xi Yang, Joakim Jönsson, Ruobing Qian, Paul McKee, Kanghyun Kim, et al. “Transient Motion Classification Through Turbid Volumes via Parallelized Single-Photon Detection and Deep Contrastive Embedding.” Frontiers in Neuroscience 16 (January 2022): 908770. https://doi.org/10.3389/fnins.2022.908770.

Xu, S., X. Yang, J. Jönsson, H. Chang, and R. Horstmeyer. “Speckle contrast diffuse correlation spectroscopy with parallelized single photon detection.” In Optics InfoBase Conference Papers, 2022.

Yao, Xing, Vinayak Pathak, Haoran Xi, Amey Chaware, Colin Cooke, Kanghyun Kim, Shiqi Xu, et al. “Increasing a microscope's effective field of view via overlapped imaging and machine learning.” Optics Express 30, no. 2 (January 2022): 1745–61. https://doi.org/10.1364/oe.445001.

Feiger, B., E. Lorenzana-Saldivar, C. Cooke, R. Horstmeyer, M. Bishawi, J. Doberne, G. C. Hughes, D. Ranney, S. Voigt, and A. Randles. “Evaluation of U-Net Based Architectures for Automatic Aortic Dissection Segmentation.” ACM Transactions on Computing for Healthcare 3, no. 1 (January 1, 2022). https://doi.org/10.1145/3472302.

Gigan, Sylvain, Ori Katz, Hilton B de Aguiar, Esben Ravn Andresen, Alexandre Aubry, Jacopo Bertolotti, Emmanuel Bossy, et al. “Roadmap on Wavefront Shaping and deep imaging in complex media,” November 29, 2021.

YANG, X., P. C. KONDA, S. XU, L. BIAN, and R. HORSTMEYER. “Quantized Fourier ptychography with binary images from SPAD cameras.” Photonics Research 9, no. 10 (October 1, 2021): 1958–69. https://doi.org/10.1364/PRJ.427699.

Dai, Xiang, Shiqi Xu, Xi Yang, Kevin C. Zhou, Carolyn Glass, Pavan Chandra Konda, and Roarke Horstmeyer. “Quantitative Jones matrix imaging using vectorial Fourier ptychography,” September 30, 2021.

Cooke, Colin L., Kanghyun Kim, Shiqi Xu, Amey Chaware, Xing Yao, Xi Yang, Jadee Neff, et al. “Deep Optical Blood Analysis: COVID-19 Detection as a Case Study in Next Generation Blood Screening.” Cold Spring Harbor Laboratory, July 22, 2021. https://doi.org/10.1101/2021.07.18.21259553.

Xu, Shiqi, Xi Yang, Wenhui Liu, Joakim Jonsson, Ruobing Qian, Pavan Chandra Konda, Kevin C. Zhou, et al. “Imaging dynamics beneath turbid media via parallelized single-photon detection,” July 3, 2021.

Vu, Tri, Anthony DiSpirito, Daiwei Li, Zixuan Wang, Xiaoyi Zhu, Maomao Chen, Laiming Jiang, et al. “Deep image prior for undersampling high-speed photoacoustic microscopy.” Photoacoustics 22 (June 2021): 100266. https://doi.org/10.1016/j.pacs.2021.100266.

Vu, T., A. DiSpirito, D. Li, Z. Wang, X. Zhu, M. Chen, L. Jiang, et al. “Deep image prior for undersampling high-speed photoacoustic microscopy.” Photoacoustics 22 (June 1, 2021). https://doi.org/10.1016/j.pacs.2021.100266.

Fontes, Cassio M., Barbara D. Lipes, Jason Liu, Krystle N. Agans, Aiwei Yan, Patricia Shi, Daniela F. Cruz, et al. “Ultrasensitive point-of-care immunoassay for secreted glycoprotein detects Ebola infection earlier than PCR.” Sci Transl Med 13, no. 588 (April 7, 2021). https://doi.org/10.1126/scitranslmed.abd9696.