Publications

Found 59 results
Type [ Year(Asc)]
2022
Bradley Feiger, Erick Lorenzana-Saldivar, Colin Cooke, Roarke Horstmeyer, Muath Bishawi, Julie Doberne, Chad G. Hughes, David Ranney, Soraya Voigt, and Amanda Randles. "Evaluation of U-Net Based Architectures for Automatic Aortic Dissection Segmentation." ACM Transactions on Computing for Healthcare 3, no. 1 (2022): 1-16.
Xing Yao, Vinayak Pathak, Haoran Xi, Amey Chaware, Colin Cooke, Kanghyun Kim, Shiqi Xu, Yuting Li, Timothy Dunn, Pavan Chandra Konda et al. "Increasing a microscope’s effective field of view via overlapped imaging and machine learning." Optics Express 30, no. 2 (2022): 1745.
Xiang Dai, Shiqi Xu, Xi Yang, Kevin C. Zhou, Carolyn Glass, Pavan Chandra Konda, and Roarke Horstmeyer. "Quantitative Jones matrix imaging using vectorial Fourier ptychography." Biomedical Optics Express 13, no. 3 (2022): 1457.
2021
Tri Vu, Anthony DiSpirito, Daiwei Li, Zixuan Wang, Xiaoyi Zhu, Maomao Chen, Laiming Jiang, Dong Zhang, Jianwen Luo, Yu Shrike Zhang et al. "Deep image prior for undersampling high-speed photoacoustic microscopy." Photoacoustics 22 (2021): 100266.
Wenhui Liu, Ruobing Qian, Shiqi Xu, Pavan Chandra Konda, Joakim Jönsson, Mark Harfouche, Dawid Borycki, Colin Cooke, Edouard Berrocal, Qionghai Dai et al. "Fast and sensitive diffuse correlation spectroscopy with highly parallelized single photon detection." APL Photonics 6, no. 2 (2021): 026106.
Colin L. Cooke, Fanjie Kong, Amey Chaware, Kevin C. Zhou, Kanghyun Kim, Rong Xu, Michael D. Ando, Samuel J. Yang, Pavan Chandra Konda, and Roarke Horstmeyer. Physics-Enhanced Machine Learning for Virtual Fluorescence Microscopy In Proceedings of the IEEE/CVF International Conference on Computer Vision (ICCV)., 2021.
Kevin C. Zhou, Colin Cooke, Jaehee Park, Ruobing Qian, Roarke Horstmeyer, Joseph A. Izatt, and Sina Farsiu. Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition (CVPR) In Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition (CVPR)., 2021.
Xi Yang, Pavan Chandra Konda, Shiqi Xu, Liheng Bian, and Roarke Horstmeyer. "Quantized Fourier ptychography with binary images from SPAD cameras." Photonics Research 9, no. 10 (2021): 1958.
Anthony DiSpirito, Daiwei Li, Tri Vu, Maomao Chen, Dong Zhang, Jianwen Luo, Roarke Horstmeyer, and Junjie Yao. "Reconstructing Undersampled Photoacoustic Microscopy Images Using Deep Learning." IEEE Transactions on Medical Imaging 40, no. 2 (2021): 562-570.
Carolyn Glass, Kyle J. Lafata, William Jeck, Roarke Horstmeyer, Colin Cooke, Jeffrey Everitt, Matthew Glass, David Dov, and Michael A. Seidman. "The role of machine learning in cardiovascular pathology." Canadian Journal of Cardiology (2021).
Cassio M. Fontes, Barbara D. Lipes, Jason Liu, Krystle N. Agans, Aiwei Yan, Patricia Shi, Daniela F. Cruz, Garrett Kelly, Kelli M. Luginbuhl, Daniel Y. Joh et al. "Ultrasensitive point-of-care immunoassay for secreted glycoprotein detects Ebola infection earlier than PCR." Science Translational Medicine 13, no. 588 (2021).
2020
Wenhui Liu, Shiqi Xu, Ruobing Qian, Pavan Chanda Konda, and Roarke Horstmeyer. "Classifying decorrelation events hidden beneath scattering media via SPAD array detection." In Computational Optical Sensing and Imaging. Washington, DC: OSA 2020.
Kevin C. Zhou, and Roarke Horstmeyer. "Diffraction tomography with a deep image prior." Optics Express 28, no. 9 (2020): 12872.
Wenhui Liu, Ruobing Qian, Shiqi Xu, Pavan Chandra Konda, and Roarke Horstmeyer. "Fast sensitive diffuse correlation spectroscopy with a SPAD array." In Biophotonics Congress: Biomedical Optics 2020. Washington, DC: OSA 2020.
Pavan Chandra Konda, Lars Loetgering, Kevin C. Zhou, Shiqi Xu, Andrew R. Harvey, and Roarke Horstmeyer. "Fourier ptychography: current applications and future promises." Optics Express 28, no. 7 (2020): 9603.
Lars Loetgering, Margarita Baluktsian, Kahraman Keskinbora, Roarke Horstmeyer, Thomas Wilhein, Gisela ü tz, Kjeld S. E. Eikema, and Stefan Witte. "Generation and characterization of focused helical x-ray beams." Science Advances 6, no. 7 (2020): eaax8836.
Kanghyun Kim, Pavan Chandra Konda, Colin L. Cooke, Ron Appel, and Roarke Horstmeyer. "Multi-element microscope optimization by a learned sensing network with composite physical layers." Optics Letters 45, no. 20 (2020): 5684.
Xiang Dai, Pavan Chanda Konda, Shiqi Xu, and Roarke W. Horstmeyer. "Towards a vectorial treatment of Fourier ptychographic microscopy." In Computational Optical Sensing and Imaging, Imaging and Applied Optics Congress. Washington, D.C.: OSA 2020.
2019
Ling Zhong, Pavan Chandra Konda, Mark Harfouche, and Roarke Horstmeyer. "Depth tracking using a multi-aperture microscope." In Computational Optical Sensing and Imaging. Munich: OSA 2019.
Mark Harfouche, Timothy W. Dunn, Eva A. Naumann, and Roarke Horstmeyer. "Imaging the behavior and neural activity of freely moving organisms with a gigapixel microscope." In Optics and the Brain, Biophotonics Congress. Tucson, Arizona: OSA 2019.
Philipp Hougne, Mohammadreza F. Imani, Aaron V. Diebold, Roarke Horstmeyer, and David R. Smith. "Learned Integrated Sensing Pipeline: Reconfigurable Metasurface Transceivers as Trainable Physical Layer in an Artificial Neural Network." Advanced Science 12 (2019): 1901913.
Alex Muthumbi, Amey Chaware, Kanghyun Kim, Kevin C. Zhou, Pavan Chandra Konda, Richard Chen, Benjamin Judkewitz, Andreas Erdmann, Barbara Kappes, and Roarke Horstmeyer. "Learned sensing: jointly optimized microscope hardware for accurate image classification." Biomedical Optics Express, no. 12 (2019): 6351.
Amey Chaware, Colin Cooke, Kanghyun Kim, and Roarke Horstmeyer. "Towards an Intelligent Microscope: adaptively learned illumination for optimal sample classification." ArXiv (2019).
2018
Mykola Kadobianskyi, Ioannis N. Papadopoulos, Thomas Chaigne, Roarke Horstmeyer, and Benjamin Judkewitz. "Scattering correlations of time-gated light." Optica, no. 4 (2018): 389.
2017
R. Horstmeyer, R. Y. Chen, B. Kappes, and B. Judkewitz. "Convolutional neural networks that teach microscopes how to image." arXiv:1709.07223 (2017).

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